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X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT4G09670
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 10 MG/ML PROTEIN, 15% PEG4K,
0.168 M SODIUM CHLORIDE, 0.050 M PIPES, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.55 51.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.197 α = 90 b = 107.663 β = 90 c = 129.748 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm BENT CYLINDRICAL SI-MIRROR (RH COATING) 2004-10-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.97927 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.488 33.749 98.3 0.107 13.245 13.4 29008
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.488 2.59 84.5 0.298 4.321 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.488 31.06 27390 1472 98.351 0.22155 0.21822 0.2261 0.28254 0.2865 RANDOM 33.072
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.389 2.068 -3.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.318 r_dihedral_angle_4_deg 21.043 r_dihedral_angle_3_deg 19.93 r_dihedral_angle_1_deg 8.041 r_scangle_it 7.878 r_scbond_it 5.826 r_mcangle_it 3.216 r_angle_refined_deg 2.05 r_mcbond_it 1.757 r_symmetry_hbond_refined 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.318 r_dihedral_angle_4_deg 21.043 r_dihedral_angle_3_deg 19.93 r_dihedral_angle_1_deg 8.041 r_scangle_it 7.878 r_scbond_it 5.826 r_mcangle_it 3.216 r_angle_refined_deg 2.05 r_mcbond_it 1.757 r_symmetry_hbond_refined 0.34 r_nbtor_refined 0.326 r_nbd_refined 0.277 r_symmetry_vdw_refined 0.238 r_xyhbond_nbd_refined 0.216 r_chiral_restr 0.162 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5340 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement