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Conserved hypothetical protein from Pyrococcus furiosus Pfu-1581948-001
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 7.5 291 0.8M sodium dihydrogen phosphate, 0.8M disodium hydrogen phosphate, 0.1M HEPES, pH 7.5, modified microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.54 51.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.501 α = 90 b = 52.501 β = 90 c = 80.217 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0090 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 50 99.4 0.055 10567
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.89 95 0.231
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 1.82 43.937 10521 497 99.32 0.203 0.20257 0.2009 0.2152 0.2366 0.2467 RANDOM 17.032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.033 0.033 -0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.236 r_dihedral_angle_4_deg 21.842 r_dihedral_angle_3_deg 11.379 r_scangle_it 4.622 r_dihedral_angle_1_deg 4.15 r_angle_other_deg 3.939 r_mcangle_it 3.049 r_scbond_it 2.8 r_scangle_other 2.24 r_mcangle_other 2.027
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.236 r_dihedral_angle_4_deg 21.842 r_dihedral_angle_3_deg 11.379 r_scangle_it 4.622 r_dihedral_angle_1_deg 4.15 r_angle_other_deg 3.939 r_mcangle_it 3.049 r_scbond_it 2.8 r_scangle_other 2.24 r_mcangle_other 2.027 r_mcbond_it 2.003 r_angle_refined_deg 1.238 r_symmetry_vdw_refined 0.321 r_symmetry_vdw_other 0.283 r_nbd_refined 0.217 r_nbd_other 0.21 r_nbtor_refined 0.165 r_xyhbond_nbd_refined 0.12 r_nbtor_other 0.097 r_chiral_restr 0.085 r_symmetry_hbond_refined 0.069 r_bond_refined_d 0.013 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_mcbond_other r_scbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 591 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection ARP/wARP model building