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Conserved hypothetical protein Cth-383 from Clostridium thermocellum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 291 20% w/v PEG 3350, 0.2M trilithium citrate, modified microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 27.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.914 α = 90 b = 36.792 β = 111.93 c = 61.824 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9793 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 50 73.3 0.063 16740
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.77 12.1 0.396
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 1.8 30.964 16267 840 100 0.226 0.22621 0.2246 0.2469 0.2564 0.2774 thin shells 28.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.354 -0.413 1.125 -1.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.552 r_dihedral_angle_4_deg 20.756 r_dihedral_angle_3_deg 14.506 r_scangle_it 5.031 r_dihedral_angle_1_deg 4.746 r_scbond_it 3.164 r_scangle_other 1.878 r_mcangle_it 1.459 r_angle_refined_deg 1.455 r_mcbond_it 1.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.552 r_dihedral_angle_4_deg 20.756 r_dihedral_angle_3_deg 14.506 r_scangle_it 5.031 r_dihedral_angle_1_deg 4.746 r_scbond_it 3.164 r_scangle_other 1.878 r_mcangle_it 1.459 r_angle_refined_deg 1.455 r_mcbond_it 1.299 r_angle_other_deg 0.842 r_scbond_other 0.645 r_mcangle_other 0.638 r_mcbond_other 0.295 r_symmetry_vdw_other 0.272 r_nbd_refined 0.21 r_nbd_other 0.165 r_nbtor_refined 0.152 r_xyhbond_nbd_refined 0.142 r_symmetry_hbond_refined 0.141 r_symmetry_vdw_refined 0.139 r_chiral_restr 0.09 r_nbtor_other 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1337 Nucleic Acid Atoms Solvent Atoms 90 Heterogen Atoms 4
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection ISAS phasing ARP/wARP model building