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Cystal structure Analysis of S.typhimurium PhoQ sensor domain with Calcium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 PEG 8000, tris-HCL, calcium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3 58.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.078 α = 90 b = 134.871 β = 119.61 c = 58.444 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 2003-11-18 M SAD 2 1 CCD ADSC QUANTUM 4 2003-11-18
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9793 ALS 5.0.2 2 SYNCHROTRON ALS BEAMLINE 5.0.1 0.9939 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 95 0.04 35.29 3.6 29394
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 72.2 0.253 3.68 2.6 2242
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD and MR THROUGHOUT 2.4 50 27970 1514 94.85 0.244 0.24205 0.2456 0.27952 0.2766 RANDOM 27.383
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.49 -1.59 -2.26 4.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.621 r_scangle_it 2.396 r_scbond_it 1.444 r_angle_refined_deg 1.145 r_mcangle_it 0.987 r_angle_other_deg 0.778 r_mcbond_it 0.59 r_symmetry_vdw_other 0.237 r_nbd_other 0.21 r_nbd_refined 0.188
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.621 r_scangle_it 2.396 r_scbond_it 1.444 r_angle_refined_deg 1.145 r_mcangle_it 0.987 r_angle_other_deg 0.778 r_mcbond_it 0.59 r_symmetry_vdw_other 0.237 r_nbd_other 0.21 r_nbd_refined 0.188 r_metal_ion_refined 0.184 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.177 r_symmetry_vdw_refined 0.128 r_nbtor_other 0.085 r_chiral_restr 0.065 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4345 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 7
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling SHARP phasing REFMAC refinement HKL-2000 data reduction