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Structure of T. maritima FliN flagellar rotor protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O6A 1O6A.pdb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.9 293 18% MPD, 100mM MES buffer, pH 5.9, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.7 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.173 α = 90 b = 100.173 β = 90 c = 87.853 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.979277 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 87.7 95.9 0.07 7.3 11 7246 7246
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.52 93.4 0.289 1.8 11 996
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1O6A.pdb 3.4 19.9 7246 6906 340 99.04 0.22735 0.22735 0.22437 0.2101 0.28624 0.2668 RANDOM 112.247
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.52 3.26 6.52 -9.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.642 r_dihedral_angle_3_deg 23.97 r_dihedral_angle_4_deg 17.903 r_dihedral_angle_1_deg 8.738 r_scangle_it 3.353 r_angle_refined_deg 1.76 r_scbond_it 1.708 r_mcangle_it 1.396 r_mcbond_it 0.746 r_nbtor_refined 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.642 r_dihedral_angle_3_deg 23.97 r_dihedral_angle_4_deg 17.903 r_dihedral_angle_1_deg 8.738 r_scangle_it 3.353 r_angle_refined_deg 1.76 r_scbond_it 1.708 r_mcangle_it 1.396 r_mcbond_it 0.746 r_nbtor_refined 0.326 r_nbd_refined 0.264 r_symmetry_vdw_refined 0.261 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.119 r_bond_refined_d 0.014 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1352 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing