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Bordetella ferric binding protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 292.15 PEG 1500, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 292.15K
Crystal Properties Matthews coefficient Solvent content 2.36 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.39 α = 90 b = 71.47 β = 90 c = 74.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2002-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL 1.08 SSRL
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 23.7 92.2 0.036 24.1 59653 59653
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.42 71.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.39 23.7 54837 54837 4815 100 0.16613 0.16613 0.1645 0.1655 0.18434 0.1846 RANDOM 14.185
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.832 r_scangle_it 3.521 r_sphericity_free 3.42 r_scbond_it 2.296 r_sphericity_bonded 2.1 r_mcangle_it 1.669 r_angle_refined_deg 1.393 r_rigid_bond_restr 1.209 r_mcbond_it 1.052 r_angle_other_deg 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.832 r_scangle_it 3.521 r_sphericity_free 3.42 r_scbond_it 2.296 r_sphericity_bonded 2.1 r_mcangle_it 1.669 r_angle_refined_deg 1.393 r_rigid_bond_restr 1.209 r_mcbond_it 1.052 r_angle_other_deg 0.88 r_nbd_refined 0.447 r_nbd_other 0.294 r_symmetry_vdw_other 0.257 r_symmetry_vdw_refined 0.201 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.122 r_nbtor_other 0.098 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2399 Nucleic Acid Atoms Solvent Atoms 322 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing