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Crystal structure of exo-inulinase from Aspergillus awamori in spacegroup P212121
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 15% PEG3350, 1 mM sodium cacodylate, 20-100 mM sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.2 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.816 α = 90 b = 82.131 β = 90 c = 136.219 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2003-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.42 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 19.9 100 0.054 8 5.5 54756 54756
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 1.99 100 0.297 3.8 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.89 19.9 54756 54756 2777 100 0.16662 0.16486 0.19973 0.1891 RANDOM 24.909
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.79 -1.24 -2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.842 r_dihedral_angle_4_deg 16.102 r_dihedral_angle_3_deg 11.918 r_dihedral_angle_1_deg 6.826 r_scangle_it 2.697 r_scbond_it 1.869 r_angle_refined_deg 1.307 r_mcangle_it 1.129 r_mcbond_it 0.767 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.842 r_dihedral_angle_4_deg 16.102 r_dihedral_angle_3_deg 11.918 r_dihedral_angle_1_deg 6.826 r_scangle_it 2.697 r_scbond_it 1.869 r_angle_refined_deg 1.307 r_mcangle_it 1.129 r_mcbond_it 0.767 r_nbtor_refined 0.311 r_symmetry_vdw_refined 0.22 r_nbd_refined 0.19 r_symmetry_hbond_refined 0.144 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4042 Nucleic Acid Atoms Solvent Atoms 639 Heterogen Atoms 166
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling SHARP phasing