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crystal structure of the Gemin6/Gemin7 heterodimer from the human SMN complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 291 sodium acetate, MPD, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.1 60.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.011 α = 90 b = 136.011 β = 90 c = 81.515 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-07-24 M MAD 2 1 CCD ADSC QUANTUM 4 2003-07-24
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.07810 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.2 1.07810 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.002 50 95.6 49487 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.002 2.054 95.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.002 20 5 46929 49487 2516 95.36 0.219 0.21869 0.21697 0.2212 0.25177 RANDOM 37.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 1.09 -2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.825 r_scangle_it 4.338 r_scbond_it 2.493 r_mcangle_it 1.603 r_angle_refined_deg 1.283 r_mcbond_it 0.804 r_angle_other_deg 0.79 r_symmetry_vdw_other 0.28 r_symmetry_vdw_refined 0.245 r_nbd_other 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.825 r_scangle_it 4.338 r_scbond_it 2.493 r_mcangle_it 1.603 r_angle_refined_deg 1.283 r_mcbond_it 0.804 r_angle_other_deg 0.79 r_symmetry_vdw_other 0.28 r_symmetry_vdw_refined 0.245 r_nbd_other 0.242 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.134 r_nbtor_other 0.085 r_chiral_restr 0.084 r_bond_refined_d 0.019 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2710 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing