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Crystal Structure of devB protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 40% PEG-300, HEPES pH 7.5, 0.2 M NaCl, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.68 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.078 α = 90 b = 85.078 β = 90 c = 181.08 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 MIRRORS 2004-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.9 0.092 19.55 5.6 52566 52566 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.501 3.44 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 41.42 49488 49488 2594 99.91 0.16076 0.16076 0.15901 0.1615 0.19434 0.1952 RANDOM 25.964
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.03 0.05 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.429 r_dihedral_angle_3_deg 12.913 r_dihedral_angle_4_deg 12.078 r_dihedral_angle_1_deg 5.937 r_scangle_it 3.822 r_scbond_it 2.697 r_angle_refined_deg 1.42 r_mcangle_it 1.332 r_mcbond_it 1.015 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.429 r_dihedral_angle_3_deg 12.913 r_dihedral_angle_4_deg 12.078 r_dihedral_angle_1_deg 5.937 r_scangle_it 3.822 r_scbond_it 2.697 r_angle_refined_deg 1.42 r_mcangle_it 1.332 r_mcbond_it 1.015 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.216 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.195 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3640 Nucleic Acid Atoms Solvent Atoms 597 Heterogen Atoms 79
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing MLPHARE phasing DM model building RESOLVE model building REFMAC refinement SCALEPACK data scaling DM phasing RESOLVE phasing Coot model building