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T-To-T(High) quaternary transitions in human hemoglobin: betaP100A deoxy low-salt (1 test set)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Y0T PDB ENTRY 1Y0T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch 7 298 10% PEG 6000, 10 mM potassium phosphate, 100 mM potassium chloride, 3 mM sodium dithionite, 10 mg/ml Hb, pH 7.0, batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.56 51.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.1 α = 90 b = 100.2 β = 90 c = 65.4 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 177 IMAGE PLATE RIGAKU RAXIS IV Osmic Mirrors 2001-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 25.3 91.2 0.046 12.2 2.9 34509
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.27 81.4 0.175 3.9 2.6 6226
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Y0T 2.1 10 2 32658 32522 2820 91.2 0.207 0.284 0.1982 MATCHED TO PDB ENTRY 1Y0T 24.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.2 p_staggered_tor 21.8 p_scangle_it 7.343 p_scbond_it 5.833 p_mcangle_it 4.283 p_mcbond_it 3.186 p_planar_tor 2.6 p_xyhbond_nbd 0.192 p_multtor_nbd 0.182 p_singtor_nbd 0.171
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 32.2 p_staggered_tor 21.8 p_scangle_it 7.343 p_scbond_it 5.833 p_mcangle_it 4.283 p_mcbond_it 3.186 p_planar_tor 2.6 p_xyhbond_nbd 0.192 p_multtor_nbd 0.182 p_singtor_nbd 0.171 p_chiral_restr 0.158 p_hb_or_metal_coord 0.146 p_planar_d 0.051 p_angle_d 0.03 p_bond_d 0.013 p_plane_restr 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4382 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 172
Software Software Software Name Purpose SDMS data collection SDMS data reduction X-PLOR model building PROLSQ refinement SDMS data scaling X-PLOR phasing