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Structure of unphosphorylated c-Src in complex with an inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 ammonium sulfate, tris, glycerol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.4 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.212 α = 90 b = 106.212 β = 90 c = 123.731 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 94 CCD MARRESEARCH 2002-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00799 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.8 55770 55642
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 40 52747 52747 2813 99.49 0.18909 0.18909 0.18781 0.198 0.2134 0.2194 RANDOM 27.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.11 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.002 r_scangle_it 4.591 r_scbond_it 2.847 r_mcangle_it 1.962 r_angle_refined_deg 1.253 r_mcbond_it 1.13 r_angle_other_deg 0.793 r_symmetry_vdw_other 0.283 r_nbd_other 0.24 r_symmetry_hbond_refined 0.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.002 r_scangle_it 4.591 r_scbond_it 2.847 r_mcangle_it 1.962 r_angle_refined_deg 1.253 r_mcbond_it 1.13 r_angle_other_deg 0.793 r_symmetry_vdw_other 0.283 r_nbd_other 0.24 r_symmetry_hbond_refined 0.196 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.146 r_nbtor_other 0.079 r_chiral_restr 0.078 r_symmetry_vdw_refined 0.066 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3600 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing