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X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 294 1.3 M ammonium sulfate, 1% PEG 3350, 100 mM Bis-Tris, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.9 33.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.261 α = 90 b = 81.018 β = 90 c = 106.279 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794255 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 40 97.2 0.101 17 6.6 36081 35057
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.26 62 0.589 1.42 2.2
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.2 34.1 35030 35030 2038 97.66 0.1988 0.1988 0.1973 0.2099 0.2482 0.223 random 36.593
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.66 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.96 r_dihedral_angle_4_deg 17.458 r_dihedral_angle_3_deg 17.322 r_dihedral_angle_1_deg 6.141 r_scangle_it 4.018 r_scbond_it 2.579 r_mcangle_it 1.699 r_angle_refined_deg 1.459 r_mcbond_it 1.13 r_symmetry_hbond_refined 0.359
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.96 r_dihedral_angle_4_deg 17.458 r_dihedral_angle_3_deg 17.322 r_dihedral_angle_1_deg 6.141 r_scangle_it 4.018 r_scbond_it 2.579 r_mcangle_it 1.699 r_angle_refined_deg 1.459 r_mcbond_it 1.13 r_symmetry_hbond_refined 0.359 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.105 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5512 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing SOLVE phasing