1Y0D

T-to-THigh Quaternary Transitions in Human Hemoglobin: desArg141alpha deoxy low-salt


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1XXTPDB ENTRY 1XXT

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1729810% PEG 6000, 10 mM potassium phosphate, 100 mM potassium chloride, 3 mM sodium dithionite, 10 mg/ml Hb, pH 7.0, batch, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5651.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.9α = 90
b = 99β = 90
c = 65.9γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298AREA DETECTORSDMSGRAPHITE1992-10-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15097.20.05912.2736277
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.12.2786.50.1892.23.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1XXT2.11023571334434313297.20.1750.242MATCHED TO PDB ENTRY 1XXT25.05
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.3
p_staggered_tor21
p_scangle_it7.075
p_scbond_it5.387
p_mcangle_it3.027
p_planar_tor2.4
p_mcbond_it2.359
p_xyhbond_nbd0.187
p_multtor_nbd0.167
p_singtor_nbd0.161
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.3
p_staggered_tor21
p_scangle_it7.075
p_scbond_it5.387
p_mcangle_it3.027
p_planar_tor2.4
p_mcbond_it2.359
p_xyhbond_nbd0.187
p_multtor_nbd0.167
p_singtor_nbd0.161
p_chiral_restr0.135
p_hb_or_metal_coord0.13
p_planar_d0.043
p_angle_d0.027
p_bond_d0.011
p_plane_restr0.011
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4358
Nucleic Acid Atoms
Solvent Atoms194
Heterogen Atoms172

Software

Software
Software NamePurpose
SDMSdata collection
SDMSdata reduction
X-PLORmodel building
PROLSQrefinement
SDMSdata scaling
X-PLORphasing