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Thyroxine-Thyroid Hormone Receptor Interactions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other TRb-TRIAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 279 sodium acetate, cacodylate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 279K
Crystal Properties Matthews coefficient Solvent content 3.17 60.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.764 α = 90 b = 68.764 β = 90 c = 130.943 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.09720 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 99.8 0.092 16507 16507 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 99.1 0.692 791
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT TRb-TRIAC 2.5 19.84 12903 12903 1293 100 0.191 0.191 0.185 0.1978 0.244 0.2509 RANDOM 46.305
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.88 0.44 0.88 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.603 r_scangle_it 5.876 r_scbond_it 3.652 r_mcangle_it 2.408 r_angle_refined_deg 2.31 r_mcbond_it 1.296 r_angle_other_deg 1.145 r_symmetry_vdw_refined 0.311 r_symmetry_vdw_other 0.294 r_symmetry_hbond_refined 0.291
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.603 r_scangle_it 5.876 r_scbond_it 3.652 r_mcangle_it 2.408 r_angle_refined_deg 2.31 r_mcbond_it 1.296 r_angle_other_deg 1.145 r_symmetry_vdw_refined 0.311 r_symmetry_vdw_other 0.294 r_symmetry_hbond_refined 0.291 r_nbd_refined 0.287 r_xyhbond_nbd_refined 0.275 r_nbd_other 0.247 r_chiral_restr 0.151 r_nbtor_other 0.098 r_bond_refined_d 0.031 r_gen_planes_other 0.019 r_gen_planes_refined 0.015 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1916 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 29
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement EPMR phasing