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Complex of apoferritin with isoflurane
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GWG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 cadmium sulfate, HEPES, sodium acetate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.15 60.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.51 α = 90 b = 181.51 β = 90 c = 181.51 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 parabolic collimating mirror upstream of monochromator 2004-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 1.0722 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 30 95.3 0.064 16.6 10.4 25454 25454
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.82 78.1 0.431 2.2 2.8 2551
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1GWG 1.75 30 23916 23916 1287 95.54 0.1804 0.1804 0.17889 0.21046 0.2117 RANDOM 18.404
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.79 r_dihedral_angle_1_deg 4.497 r_scbond_it 2.758 r_mcangle_it 1.618 r_angle_refined_deg 1.185 r_angle_other_deg 0.797 r_mcbond_it 0.797 r_symmetry_vdw_other 0.294 r_symmetry_vdw_refined 0.288 r_nbd_refined 0.277
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 4.79 r_dihedral_angle_1_deg 4.497 r_scbond_it 2.758 r_mcangle_it 1.618 r_angle_refined_deg 1.185 r_angle_other_deg 0.797 r_mcbond_it 0.797 r_symmetry_vdw_other 0.294 r_symmetry_vdw_refined 0.288 r_nbd_refined 0.277 r_nbd_other 0.25 r_symmetry_hbond_refined 0.222 r_xyhbond_nbd_refined 0.192 r_nbtor_other 0.085 r_chiral_restr 0.074 r_metal_ion_refined 0.074 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1354 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement MAR345 data collection d*TREK data scaling