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Complex of halothane with apoferritin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GWG PDB ENTRY 1GWG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 cadmium sulfate, HEPES, sodium acetate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.15 60.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.61 α = 90 b = 181.61 β = 90 c = 181.61 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.9197 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.71 30 99.5 0.081 15.9 18.2 28090 28090
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.71 1.82 99.2 0.514 3.7 8.2 4571
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1GWG 1.75 30 24966 24966 1340 99.52 0.181 0.181 0.17931 0.1913 0.21157 0.217 RANDOM 17.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.742 r_scangle_it 4.701 r_scbond_it 2.704 r_mcangle_it 1.574 r_angle_refined_deg 1.187 r_angle_other_deg 0.806 r_mcbond_it 0.767 r_symmetry_vdw_other 0.292 r_symmetry_vdw_refined 0.282 r_nbd_other 0.249
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 4.742 r_scangle_it 4.701 r_scbond_it 2.704 r_mcangle_it 1.574 r_angle_refined_deg 1.187 r_angle_other_deg 0.806 r_mcbond_it 0.767 r_symmetry_vdw_other 0.292 r_symmetry_vdw_refined 0.282 r_nbd_other 0.249 r_nbd_refined 0.241 r_symmetry_hbond_refined 0.208 r_xyhbond_nbd_refined 0.198 r_nbtor_other 0.103 r_chiral_restr 0.073 r_metal_ion_refined 0.051 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1354 Nucleic Acid Atoms Solvent Atoms 206 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement MAR345 data collection d*TREK data scaling