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X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT5G48480
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 12.2 MG/ML REDUCTIVELY METHYLATED PROTEIN, 2.03 M AMMONIUM SULFATE, 0.100 M MES/ACETATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 1.88 34.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.871 α = 90 b = 55.871 β = 90 c = 147.341 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm bent cylindrical Si-mirror (Rh coating) 2004-10-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.97919, 0.97942, 0.95653 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 27.447 98.9 0.037 29.85 13.6 25282
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 99.6 0.123 10.84 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 49.088 25171 1282 98.629 0.184 0.184 0.1817 0.182 0.228 0.2283 RANDOM 26.655
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.767 0.384 0.767 -1.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.755 r_dihedral_angle_3_deg 13.068 r_scangle_it 8.572 r_scbond_it 5.903 r_dihedral_angle_1_deg 5.161 r_mcangle_it 3.527 r_mcbond_it 2.086 r_angle_refined_deg 1.689 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.245
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.755 r_dihedral_angle_3_deg 13.068 r_scangle_it 8.572 r_scbond_it 5.903 r_dihedral_angle_1_deg 5.161 r_mcangle_it 3.527 r_mcbond_it 2.086 r_angle_refined_deg 1.689 r_nbtor_refined 0.313 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.184 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.148 r_bond_refined_d 0.019 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1803 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS phasing REFMAC refinement