1XV0
Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D TOCSY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 303 | ||
2 | 2D NOESY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 303 | ||
3 | DQF-COSY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 273 | ||
4 | 2D NOESY | 80 mM NaCl, 10 mM Sodium phosphates, 0.5 mM EDTA, pH5.9 10% D2O | NMR | 5.9 | 1 atm | 273 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 40 |
Conformers Submitted Total Number | 33 |
Representative Model | 17 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | Felix | 2000 | |
2 | structure solution | Discover | ||
3 | refinement | Discover | ||
4 | structure solution | Amber |