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Structural Analysis of Leishmania major LMAJ004091AAA, a SAM-dependent methyltransferase of the DUF858/Pfam05891 family
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 MOPS, Potassium phosphate monobasic, PEG 3350, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.208 α = 90 b = 42.56 β = 98.27 c = 69.853 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9794 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 66.8 0.083 8.3 2.9 12075 12040 -3 20.263
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.94 19.9 11369 11369 638 68.78 0.15662 0.15662 0.15313 0.1667 0.21884 0.227 RANDOM 25.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.05 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.119 r_dihedral_angle_3_deg 12.667 r_dihedral_angle_4_deg 11.736 r_dihedral_angle_1_deg 5.847 r_scangle_it 5.002 r_scbond_it 3.585 r_mcangle_it 2.758 r_mcbond_it 2.178 r_angle_refined_deg 1.276 r_angle_other_deg 0.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.119 r_dihedral_angle_3_deg 12.667 r_dihedral_angle_4_deg 11.736 r_dihedral_angle_1_deg 5.847 r_scangle_it 5.002 r_scbond_it 3.585 r_mcangle_it 2.758 r_mcbond_it 2.178 r_angle_refined_deg 1.276 r_angle_other_deg 0.763 r_mcbond_other 0.593 r_nbd_refined 0.19 r_nbtor_refined 0.182 r_symmetry_vdw_other 0.18 r_nbd_other 0.178 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.164 r_symmetry_vdw_refined 0.136 r_nbtor_other 0.083 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1931 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing