1XSA

Structure of the nudix enzyme AP4A hydrolase from homo sapiens (E63A mutant)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1C HSQC-NOESY1.0mM human AP4A hydrolase20mM MgCl2, 20mM imidazole, pH 6.5, 90% H2O 10% D2O, 10mM DTT, 1mM EDTA51mM6.5ambient293
23D_15N-separated_NOESY1.0mM human AP4A hydrolase20mM MgCl2, 20mM imidazole, pH 6.5, 90% H2O 10% D2O, 10mM DTT, 1mM EDTA51mM6.5ambient293
3C HSQC-NOESY1.0mM human AP4A hydrolase20mM MgCl2, 20mM imidazole, pH 6.5, 100% D2O, 10mM DTT, 1mM EDTA51mM6.5ambient293
43D_15N-separated_NOESY1.0mM human AP4A hydrolase20mM MgCl2, 20mM imidazole, pH 6.5, 100% D2O, 10mM DTT, 1mM EDTA51mM6.5ambient293
5C noesy-HSQC (aromatic region)1.0mM human AP4A hydrolase20mM MgCl2, 20mM imidazole, pH 6.5, 100% D2O, 10mM DTT, 1mM EDTA51mM6.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA500
NMR Refinement
MethodDetailsSoftware
CANDID with talos for NOE assignments. xplor-NIH with RAMA pot. Further Refine against CACB shiftsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number33
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsResidues 1 and 2 are changed from GP to Alanine in the calculations. These are non native from precission cleavage site and are unstructured.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANA1.0.7P. Guntert
2refinementXPLOR-NIH2.9.1