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Structure of a possible Glyoxalase from Bacillus cereus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 PEG MME 550, NaCl, BisTris, glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.1 40.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.535 α = 90 b = 61.616 β = 90 c = 78.382 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD CUSTOM-MADE SBC3 2004-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.980141 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 38.06 98.9 6.5 5 19959 19959
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.81 1.89 94.1 0.372 2.5 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 48.45 18935 18935 1024 98.9 0.224 0.19155 0.18925 0.1876 0.23552 0.2339 RANDOM 28.358
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.32 -0.93 -2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.421 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_4_deg 11.953 r_dihedral_angle_1_deg 6.851 r_scangle_it 3.503 r_scbond_it 2.226 r_mcangle_it 1.372 r_angle_refined_deg 1.257 r_mcbond_it 0.96 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.421 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_4_deg 11.953 r_dihedral_angle_1_deg 6.851 r_scangle_it 3.503 r_scbond_it 2.226 r_mcangle_it 1.372 r_angle_refined_deg 1.257 r_mcbond_it 0.96 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.252 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.086 r_metal_ion_refined 0.054 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1761 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling SHELXD phasing SOLVE phasing RESOLVE phasing ARP/wARP model building