☰ Navigation Tabs
X-ray Structure of Gene Product from Arabidopsis Thaliana At5g02240
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 10 MG/ML PROTEIN, 28 PERCENT PEG 4K,
0.034 M SODIUM MALONATE, 0.10 M BISTRIS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 2 VAPOR DIFFUSION, HANGING DROP 6.5 293 10 MG/ML PROTEIN, 24 PERCENT PEG 4K,
0.136 M SODIUM MALONATE, 0.10 M BISTRIS, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.75 α = 90 b = 69.799 β = 96.01 c = 83.828 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm bent cylindrical Si-mirror (Rh coating) 2004-08-09 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm bent cylindrical Si-mirror (Rh coating) 2004-08-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9793 APS 14-ID-B 2 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9794, 0.9790, 0.9637 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.8 23.565 93.9 0.043 19.7 5.2 52253
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 87.3 0.693 2.67 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 23.57 47341 2445 95.167 0.221 0.221 0.2183 0.2213 0.2776 0.2776 RANDOM 32.229
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.807 0.272 -0.278 2.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.077 r_dihedral_angle_3_deg 16.825 r_dihedral_angle_4_deg 15.454 r_dihedral_angle_1_deg 7.072 r_scangle_it 6.381 r_scbond_it 4.81 r_mcangle_it 2.864 r_angle_refined_deg 1.833 r_mcbond_it 1.808 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.077 r_dihedral_angle_3_deg 16.825 r_dihedral_angle_4_deg 15.454 r_dihedral_angle_1_deg 7.072 r_scangle_it 6.381 r_scbond_it 4.81 r_mcangle_it 2.864 r_angle_refined_deg 1.833 r_mcbond_it 1.808 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.232 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.181 r_symmetry_hbond_refined 0.147 r_chiral_restr 0.132 r_bond_refined_d 0.02 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3814 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms 96
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement ARP/wARP model building