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Met-Perch Hemoglobin at 1.9A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OUU PDB entry 1OUU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 7 296 PEG 4K, Hepes, pH 7.0, Batch, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.16 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.302 α = 90 b = 84.986 β = 90 c = 121.779 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD APS-1 2004-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97934 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.898 69.007 96.3322 0.084 15.096 6.5 43714 43714 -1 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 96.1 0.521 4.027 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1OUU 1.9 69.01 43714 43714 2327 96.33 0.24573 0.24298 0.2528 0.29717 0.309 RANDOM 33.047
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 -1.58 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.365 r_dihedral_angle_3_deg 18.947 r_dihedral_angle_4_deg 16.963 r_dihedral_angle_1_deg 6.887 r_scangle_it 6.581 r_scbond_it 5.027 r_mcangle_it 3.036 r_angle_refined_deg 1.809 r_mcbond_it 1.78 r_angle_other_deg 0.807
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.365 r_dihedral_angle_3_deg 18.947 r_dihedral_angle_4_deg 16.963 r_dihedral_angle_1_deg 6.887 r_scangle_it 6.581 r_scbond_it 5.027 r_mcangle_it 3.036 r_angle_refined_deg 1.809 r_mcbond_it 1.78 r_angle_other_deg 0.807 r_nbtor_other 0.341 r_nbtor_refined 0.316 r_nbd_other 0.311 r_symmetry_vdw_refined 0.26 r_nbd_refined 0.244 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.169 r_chiral_restr 0.138 r_mcbond_other 0.08 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4476 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing