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Catalytic Domain Of Human Phosphodiesterase 5A In Complex With Tadalafil
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 Jeffamine ED-2001, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.01 38.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.102 α = 90 b = 76.397 β = 103.18 c = 80.699 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 2003-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 79.06 97.38 0.077 6.7 3.4 64263 64263
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.37 1.406 96.2 0.894 1.4 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.37 79.06 64263 64263 3416 97.38 0.1541 0.15203 0.1948 0.19335 0.2243 RANDOM 10.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.18 0.37 -0.21
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 6.552 r_scangle_it 6.453 r_dihedral_angle_1_deg 4.517 r_scbond_it 4.331 r_sphericity_bonded 3.398 r_mcangle_it 2.79 r_rigid_bond_restr 2.411 r_angle_refined_deg 1.92 r_mcbond_it 1.807 r_angle_other_deg 1.114
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 6.552 r_scangle_it 6.453 r_dihedral_angle_1_deg 4.517 r_scbond_it 4.331 r_sphericity_bonded 3.398 r_mcangle_it 2.79 r_rigid_bond_restr 2.411 r_angle_refined_deg 1.92 r_mcbond_it 1.807 r_angle_other_deg 1.114 r_symmetry_vdw_refined 0.37 r_symmetry_hbond_refined 0.342 r_symmetry_vdw_other 0.302 r_nbd_other 0.245 r_nbd_refined 0.235 r_chiral_restr 0.199 r_xyhbond_nbd_refined 0.193 r_nbtor_other 0.093 r_bond_refined_d 0.024 r_bond_other_d 0.002 r_gen_planes_refined 0.001 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2637 Nucleic Acid Atoms Solvent Atoms 352 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing