1XOY
Solution structure of At3g04780.1, an Arabidopsis ortholog of the C-terminal domain of human thioredoxin-like protein
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1 mM U-15N,13C At3g04780.1, 50 mM KH2PO4, 10 mM DTT, 90%H2O, 10%D2O | 90% H2O/10% D2O | 7.2 | 1 atm | 298.2 | ||
2 | 3D_13C-separated_NOESY | 1 mM U-15N,13C At3g04780.1, 50 mM KH2PO4, 10 mM DTT, 90%H2O, 10%D2O | 90% H2O/10% D2O | 7.2 | 1 atm | 298.2 | ||
3 | 3D HNCACB | 1 mM U-15N,13C At3g04780.1, 50 mM KH2PO4, 10 mM DTT, 90%H2O, 10%D2O | 90% H2O/10% D2O | 7.2 | 1 atm | 298.2 | ||
4 | 3D CBCA(CO)NH | 1 mM U-15N,13C At3g04780.1, 50 mM KH2PO4, 10 mM DTT, 90%H2O, 10%D2O | 90% H2O/10% D2O | 7.2 | 1 atm | 298.2 | ||
5 | 3D HCCH-TOCSY | 1 mM U-15N,13C At3g04780.1, 50 mM KH2PO4, 10 mM DTT, 90%H2O, 10%D2O | 90% H2O/10% D2O | 7.2 | 1 atm | 298.2 | ||
6 | 3D C(CO)NH | 1 mM U-15N,13C At3g04780.1, 50 mM KH2PO4, 10 mM DTT, 90%H2O, 10%D2O | 90% H2O/10% D2O | 7.2 | 1 atm | 298.2 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | DMX | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing molecular dynamics | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1 | Varian |
2 | collection | XwinNMR | 2.6 | Bruker |
3 | processing | NMRPipe | 97.027.12.56 | Delaglio |
4 | data analysis | Sparky | 3.72 | Goddard T.D., Kneller, D.G. |
5 | structure solution | CYANA | 1.06 | Guntert |
6 | refinement | Xplor-NIH | 2.9.3 | Schwieters, et al. |