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Peptide trapped Holliday junction intermediate in Cre-loxP recombination
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CRX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 20 mM ACETATE BUFFER PH 5.0, 25% MPD, 20 mM CACL2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.04 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.078 α = 90 b = 121.529 β = 90 c = 177.799 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2000-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.92 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 47.67 0.062 27586 26172 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.8 2.88 0.197
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CRX 2.8 47.67 26172 1386 96.24 0.19965 0.19627 0.2004 0.26541 0.263 RANDOM 51.295
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.681 r_scangle_it 3.796 r_scbond_it 2.081 r_angle_other_deg 1.964 r_angle_refined_deg 1.713 r_mcangle_it 1.41 r_mcbond_it 0.735 r_symmetry_vdw_other 0.368 r_symmetry_hbond_refined 0.264 r_nbd_other 0.253
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.681 r_scangle_it 3.796 r_scbond_it 2.081 r_angle_other_deg 1.964 r_angle_refined_deg 1.713 r_mcangle_it 1.41 r_mcbond_it 0.735 r_symmetry_vdw_other 0.368 r_symmetry_hbond_refined 0.264 r_nbd_other 0.253 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.214 r_symmetry_vdw_refined 0.161 r_nbtor_other 0.09 r_chiral_restr 0.079 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5100 Nucleic Acid Atoms 1411 Solvent Atoms 296 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing