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Crystal structure of E.coli TPR-protein NlpI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 HEPES, MgCl2, PEG400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.82 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.351 α = 90 b = 81.654 β = 90 c = 136.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2003-11-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 0.9785, 0.9795, 0.9500 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 40 0.049 40.4 5.5 91502 48199
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.1 83.6 0.355 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.98 39.84 45781 45781 2418 94.64 0.17122 0.16937 0.1793 0.20577 0.2161 RANDOM 20.004
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.65 -0.65 -1.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.284 r_scangle_it 5.212 r_scbond_it 3.519 r_mcangle_it 2.109 r_angle_refined_deg 1.854 r_mcbond_it 1.174 r_angle_other_deg 1.075 r_symmetry_vdw_refined 0.675 r_symmetry_hbond_refined 0.639 r_symmetry_vdw_other 0.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.284 r_scangle_it 5.212 r_scbond_it 3.519 r_mcangle_it 2.109 r_angle_refined_deg 1.854 r_mcbond_it 1.174 r_angle_other_deg 1.075 r_symmetry_vdw_refined 0.675 r_symmetry_hbond_refined 0.639 r_symmetry_vdw_other 0.456 r_nbd_other 0.253 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.191 r_nbtor_other 0.093 r_bond_refined_d 0.023 r_gen_planes_refined 0.01 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4155 Nucleic Acid Atoms Solvent Atoms 436 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction CCP4 data scaling SOLVE phasing