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X-ray structure of IAA-aminoacid hydrolase from Arabidopsis thaliana gene AT5G56660
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 10 mg/mL PROTEIN, 0.080 M MAGNESIUM SULFATE,
14 % PEG 1500, 0.100 M CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.264 α = 90 b = 75.264 β = 90 c = 130.88 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD APS-1 Rosenbaum-Rock vertical focusing mirror 2004-08-01 M SINGLE WAVELENGTH 2 1 x-ray 110 CCD APS-1 Rosenbaum-Rock vertical focusing mirror 2004-07-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.96411 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 19-BM 0.97932 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2 24.21 99.9 0.043 22 8.4 29672
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2 2.07 99.9 0.334 3.8 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 24.21 29630 1504 99.821 0.159 0.159 0.1567 0.1693 0.2039 0.2193 RANDOM 27.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.005 -0.003 -0.005 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.503 r_dihedral_angle_4_deg 20.747 r_dihedral_angle_3_deg 14.355 r_scangle_it 7.081 r_dihedral_angle_1_deg 6.279 r_scbond_it 5.454 r_scangle_other 3.065 r_mcangle_it 2.872 r_mcbond_it 2.193 r_scbond_other 1.828
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.503 r_dihedral_angle_4_deg 20.747 r_dihedral_angle_3_deg 14.355 r_scangle_it 7.081 r_dihedral_angle_1_deg 6.279 r_scbond_it 5.454 r_scangle_other 3.065 r_mcangle_it 2.872 r_mcbond_it 2.193 r_scbond_other 1.828 r_angle_refined_deg 1.587 r_mcangle_other 1.339 r_angle_other_deg 0.838 r_mcbond_other 0.353 r_symmetry_vdw_other 0.279 r_symmetry_hbond_refined 0.261 r_xyhbond_nbd_refined 0.252 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.197 r_nbd_other 0.189 r_nbtor_refined 0.177 r_chiral_restr 0.099 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2889 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing ARP/wARP model building RESOLVE phasing REFMAC refinement