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X-ray structure of gene product from Arabidopsis thaliana At2g17340
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 10 MG/ML PROTEIN, 0.100M HEPPS,
0.020M MAGNESIUM CHLORIDE, 22 PERCENT PEG 8000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.08 40.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.174 α = 74.57 b = 43.28 β = 74.6 c = 52.644 γ = 84.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD APS-1 Rosenbaum-Rock vertical focusing mirror 2004-08-01 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MAR CCD 165 mm Bent cylindrical Si-mirror (Rh coating) 2004-08-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.96411 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9793, 0.9789, 0.9637 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 50 97 0.039 23.3 4.3 35346
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.73 89.5 0.277 5.23 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 49.386 35346 1773 96.672 0.172 0.17156 0.1689 0.1805 0.2213 0.2321 RANDOM 21.982
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.003 -0.961 -1.107 -1.049 1.297 0.143
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.63 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_3_deg 14.51 r_scangle_it 5.736 r_dihedral_angle_1_deg 5.623 r_scbond_it 4.174 r_mcangle_it 2.46 r_scangle_other 2.402 r_mcbond_it 1.979 r_angle_refined_deg 1.642
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.63 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_3_deg 14.51 r_scangle_it 5.736 r_dihedral_angle_1_deg 5.623 r_scbond_it 4.174 r_mcangle_it 2.46 r_scangle_other 2.402 r_mcbond_it 1.979 r_angle_refined_deg 1.642 r_scbond_other 1.448 r_mcangle_other 1.18 r_angle_other_deg 0.88 r_mcbond_other 0.324 r_nbd_refined 0.222 r_xyhbond_nbd_refined 0.195 r_symmetry_hbond_refined 0.189 r_symmetry_vdw_other 0.185 r_nbd_other 0.183 r_nbtor_refined 0.183 r_symmetry_vdw_refined 0.153 r_chiral_restr 0.106 r_nbtor_other 0.087 r_metal_ion_refined 0.032 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2734 Nucleic Acid Atoms Solvent Atoms 357 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling ARP/wARP model building