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Structure of plasmepsin II in complex of an pepstatin analogue
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.85 68.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.65 α = 90 b = 141.65 β = 90 c = 98.35 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.39 119.52 95.5 0.095 3.5 45644 45644
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 57 41389 41389 2211 95.57 0.20314 0.20314 0.20029 0.2046 0.25837 0.2599 RANDOM 36.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 0.55 1.1 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.501 r_scangle_it 2.536 r_scbond_it 1.457 r_angle_refined_deg 1.366 r_mcangle_it 1.312 r_angle_other_deg 0.792 r_mcbond_it 0.685 r_symmetry_vdw_refined 0.314 r_symmetry_vdw_other 0.234 r_nbd_other 0.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.501 r_scangle_it 2.536 r_scbond_it 1.457 r_angle_refined_deg 1.366 r_mcangle_it 1.312 r_angle_other_deg 0.792 r_mcbond_it 0.685 r_symmetry_vdw_refined 0.314 r_symmetry_vdw_other 0.234 r_nbd_other 0.227 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.187 r_xyhbond_nbd_refined 0.147 r_nbtor_other 0.088 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5214 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing