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Structure of plasmepsin II in complex with pepstatin A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.76 67.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.111 α = 90 b = 141.111 β = 90 c = 97.102 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 119.52 114632 114632 6068 98.79 0.21545 0.21545 0.2143 0.2211 0.23712 0.2426 RANDOM 23.414
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.14 -0.29 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.043 r_scangle_it 2.017 r_mcangle_it 1.975 r_angle_refined_deg 1.276 r_scbond_it 1.266 r_mcbond_it 1.187 r_angle_other_deg 0.89 r_nbd_other 0.23 r_symmetry_vdw_other 0.204 r_nbd_refined 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.043 r_scangle_it 2.017 r_mcangle_it 1.975 r_angle_refined_deg 1.276 r_scbond_it 1.266 r_mcbond_it 1.187 r_angle_other_deg 0.89 r_nbd_other 0.23 r_symmetry_vdw_other 0.204 r_nbd_refined 0.186 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.133 r_xyhbond_nbd_refined 0.126 r_symmetry_vdw_refined 0.118 r_nbtor_other 0.084 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5310 Nucleic Acid Atoms Solvent Atoms 736 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing