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structure of oligonucleotide/drug complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 MPD, barium chloride, cobalt chloride, drug, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.659 α = 90 b = 53.473 β = 90 c = 40.691 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.80000 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 40.82 0.082 6152
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.45 0.117
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 40.82 5550 602 96.09 0.202 0.19882 0.19348 0.198 0.25091 0.258 RANDOM 21.894
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 -0.4 -0.63
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 3.403 r_sphericity_bonded 3.127 r_scangle_it 2.875 r_angle_refined_deg 2.147 r_scbond_it 1.994 r_angle_other_deg 1.611 r_rigid_bond_restr 1.221 r_symmetry_hbond_refined 0.679 r_symmetry_vdw_other 0.266 r_nbd_other 0.257
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 3.403 r_sphericity_bonded 3.127 r_scangle_it 2.875 r_angle_refined_deg 2.147 r_scbond_it 1.994 r_angle_other_deg 1.611 r_rigid_bond_restr 1.221 r_symmetry_hbond_refined 0.679 r_symmetry_vdw_other 0.266 r_nbd_other 0.257 r_metal_ion_refined 0.215 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.153 r_nbtor_other 0.129 r_chiral_restr 0.093 r_gen_planes_refined 0.014 r_gen_planes_other 0.012 r_bond_refined_d 0.01 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 225 Solvent Atoms 44 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling