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1-Cys peroxidoxin from Plasmodium Yoelli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 293 22% Peg 3350, 0.1M Bis-Tris pH 5.5, 0.2M
Lithium Sulfate, 5% Ethylene Glycol, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 5.50
Crystal Properties Matthews coefficient Solvent content 3.1 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.39 α = 90 b = 156.842 β = 90 c = 178.075 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-08-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.97939, 0.97952, 0.96415 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 99.7 0.059 24 4.3 53397 -3 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 100 0.397 3.3 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 20 53397 53397 2858 99.7 0.185 0.183 0.1814 0.226 0.2233 RANDOM 37.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 1.44 -1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.42 r_dihedral_angle_3_deg 17.601 r_dihedral_angle_4_deg 15.333 r_dihedral_angle_1_deg 6.981 r_scangle_it 4.579 r_scbond_it 3.114 r_mcangle_it 1.961 r_angle_refined_deg 1.832 r_mcbond_it 1.206 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.42 r_dihedral_angle_3_deg 17.601 r_dihedral_angle_4_deg 15.333 r_dihedral_angle_1_deg 6.981 r_scangle_it 4.579 r_scbond_it 3.114 r_mcangle_it 1.961 r_angle_refined_deg 1.832 r_mcbond_it 1.206 r_nbtor_refined 0.308 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.196 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.124 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7042 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASES phasing