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Structure of a Putative Fructokinase from Bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 Ammonium sulfate, Tris, glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.1 41.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.66 α = 90 b = 112.66 β = 90 c = 75.087 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD CUSTOM-MADE SBC2 2004-07-23 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 95.35 97.01 30770 29850
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.155 98.32
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 95.35 30770 29850 1603 97.01 0.18145 0.18145 0.18029 0.20283 0.1936 RANDOM 34.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.06 -0.11 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.02 r_dihedral_angle_3_deg 13.824 r_dihedral_angle_4_deg 12.346 r_dihedral_angle_1_deg 5.851 r_scangle_it 2.884 r_scbond_it 1.764 r_mcangle_it 1.279 r_angle_refined_deg 1.172 r_mcbond_it 0.738 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.02 r_dihedral_angle_3_deg 13.824 r_dihedral_angle_4_deg 12.346 r_dihedral_angle_1_deg 5.851 r_scangle_it 2.884 r_scbond_it 1.764 r_mcangle_it 1.279 r_angle_refined_deg 1.172 r_mcbond_it 0.738 r_nbtor_refined 0.307 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.166 r_symmetry_hbond_refined 0.145 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.082 r_metal_ion_refined 0.031 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2254 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling PHENIX phasing autoSHARP phasing