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Zn substituted form of D62C/K74C double mutant of Pseudomonas Aeruginosa Azurin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AZU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.2 M Ammonium Sulfate, 0.1 M Cacodylate, 30% PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.55 51.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.14 α = 90 b = 50.038 β = 119.51 c = 57.722 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD ONYX CCD Osmic mirror 2004-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50.25 99.8 0.072 17.2 4.04 18766 18766 -3.7 20.44295
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.15 99.4 0.25 3.06 4.03 3302
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AZU 2 50.25 18145 18145 963 99.73 0.19428 0.19428 0.19208 0.23562 0.2467 RANDOM 16.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.16 0.91 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.708 r_dihedral_angle_3_deg 16.632 r_dihedral_angle_1_deg 6.991 r_dihedral_angle_4_deg 3.309 r_scangle_it 2.881 r_scbond_it 2.045 r_angle_refined_deg 1.611 r_mcangle_it 1.228 r_mcbond_it 1.045 r_angle_other_deg 0.863
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.708 r_dihedral_angle_3_deg 16.632 r_dihedral_angle_1_deg 6.991 r_dihedral_angle_4_deg 3.309 r_scangle_it 2.881 r_scbond_it 2.045 r_angle_refined_deg 1.611 r_mcangle_it 1.228 r_mcbond_it 1.045 r_angle_other_deg 0.863 r_symmetry_hbond_refined 0.235 r_nbd_refined 0.201 r_mcbond_other 0.194 r_nbd_other 0.19 r_nbtor_refined 0.179 r_symmetry_vdw_other 0.176 r_xyhbond_nbd_refined 0.161 r_symmetry_vdw_refined 0.127 r_chiral_restr 0.108 r_nbtor_other 0.091 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1913 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 2
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling