☰ Navigation Tabs
X-ray crystal structure of Xerocomus chrysenteron lectin XCL at 1.4 Angstroms resolution, mutated at Q46M, V54M, L58M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 295 ammonium sulfate, MES, zinc chloride, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.153 α = 90 b = 59.153 β = 90 c = 149.663 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-12-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9184, 0.9791 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 51.3 99.97 0.077 15.6 15.6 60727 60727 2 2 14.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 100 0.265 7.3 12.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 51.3 2 57615 57615 3075 99.97 0.17447 0.17447 0.17378 0.18743 0.2035 RANDOM 12.845
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.06 0.12 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.237 r_dihedral_angle_4_deg 14.101 r_dihedral_angle_3_deg 13.133 r_dihedral_angle_1_deg 6.07 r_sphericity_free 4.165 r_scangle_it 2.45 r_scbond_it 1.968 r_angle_other_deg 1.736 r_sphericity_bonded 1.591 r_mcangle_it 1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.237 r_dihedral_angle_4_deg 14.101 r_dihedral_angle_3_deg 13.133 r_dihedral_angle_1_deg 6.07 r_sphericity_free 4.165 r_scangle_it 2.45 r_scbond_it 1.968 r_angle_other_deg 1.736 r_sphericity_bonded 1.591 r_mcangle_it 1.36 r_angle_refined_deg 1.272 r_mcbond_it 1.08 r_rigid_bond_restr 0.932 r_mcbond_other 0.356 r_symmetry_vdw_other 0.2 r_symmetry_hbond_refined 0.198 r_nbd_other 0.185 r_nbd_refined 0.176 r_nbtor_refined 0.173 r_symmetry_vdw_refined 0.169 r_chiral_restr 0.11 r_xyhbond_nbd_refined 0.096 r_nbtor_other 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2218 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing