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Alpha-methylacyl-CoA racemase from Mycobacterium tuberculosis- mutational and structural characterization of the fold and active site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 Ammonium phosphate, pH 7.0, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.6 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.073 α = 90 b = 79.779 β = 92.04 c = 117.619 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Bent mirror 2003-08-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8112 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 35 100 0.069 0.05 16.5 3.8 155993 155993 19.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 99.9 0.373 0.315 3.4 15483
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.79 19.96 147970 147970 7398 99.47 0.16215 0.16047 0.2008 0.19333 0.2221 RANDOM 13.451
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.498 r_scangle_it 3.132 r_scbond_it 2.023 r_mcangle_it 1.198 r_angle_refined_deg 1.13 r_mcbond_it 0.703 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.198 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.498 r_scangle_it 3.132 r_scbond_it 2.023 r_mcangle_it 1.198 r_angle_refined_deg 1.13 r_mcbond_it 0.703 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.198 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.105 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10716 Nucleic Acid Atoms Solvent Atoms 1458 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement MAR345 data collection SCALEPACK data scaling SOLVE phasing