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NMR solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 NOESY 0.5mM DNA, 10mM PHOSPHATE BUFFER, 50mM NACL, 0.5mM EDTA 10mM PHOSPHATE BUFFER, 50mM NACL, 0.2mM EDTA 7.0 AMBIENT 298 2 COSY 0.5mM DNA, 10mM PHOSPHATE BUFFER, 50mM NACL, 0.5mM EDTA 10mM PHOSPHATE BUFFER, 50mM NACL, 0.2mM EDTA 7.0 AMBIENT 298 3 TOCSY 0.5mM DNA, 10mM PHOSPHATE BUFFER, 50mM NACL, 0.5mM EDTA 10mM PHOSPHATE BUFFER, 50mM NACL, 0.2mM EDTA 7.0 AMBIENT 298 4 HSQC 1H-13C 0.5mM DNA, 10mM PHOSPHATE BUFFER, 50mM NACL, 0.5mM EDTA 10mM PHOSPHATE BUFFER, 50mM NACL, 0.2mM EDTA 7.0 AMBIENT 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker AVANCE 600 3 Bruker AVANCE 500
NMR Refinement Method Details Software simulated annealing, energy minimization CNS
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 1
Additional NMR Experimental Information Details RDCs were measured in bicelles SDS solution
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.1 2 processing XwinNMR 2.5 BRUKER 3 data analysis Curves 5.3 Lavery 4 data analysis MOLMOL 2.6 Koradi