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Crystal structure of E. coli transhydrogenase domain I with bound NADH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 ammonium acetate, trisodium citrate dihydrate, PEG 4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 40.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.728 α = 67.22 b = 67.089 β = 80.19 c = 76.836 γ = 81.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 30 96.4 46153 40678 2.6 2.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.04 2.11 93.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.04 30 2.6 46153 40678 2132 96.45 0.18888 0.18888 0.18615 0.1948 0.24051 0.2426 RANDOM 34.424
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 -1.28 1.98 -0.97 -0.45 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.742 r_scangle_it 4.322 r_scbond_it 2.503 r_mcangle_it 1.701 r_angle_refined_deg 1.651 r_mcbond_it 0.923 r_angle_other_deg 0.873 r_symmetry_vdw_other 0.29 r_symmetry_vdw_refined 0.243 r_nbd_other 0.237
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.742 r_scangle_it 4.322 r_scbond_it 2.503 r_mcangle_it 1.701 r_angle_refined_deg 1.651 r_mcbond_it 0.923 r_angle_other_deg 0.873 r_symmetry_vdw_other 0.29 r_symmetry_vdw_refined 0.243 r_nbd_other 0.237 r_symmetry_hbond_refined 0.219 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.186 r_chiral_restr 0.097 r_nbtor_other 0.086 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5457 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing