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Crystal structure of E. coli transhydrogenase domain I with bound NAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 ammonium acetate, trisodium citrate dihydrate, PEG 4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.773 α = 67.08 b = 66.985 β = 80.69 c = 76.619 γ = 80.99
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-11-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 30 94.1 48479 46043 2.7 2.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.94 2.01 86.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.94 30 2.7 48479 46043 2434 94.02 0.20659 0.20659 0.20388 0.2112 0.25763 0.2587 RANDOM 35.472
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.74 -2.14 3.3 -0.92 -0.86 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.062 r_scangle_it 3.914 r_scbond_it 2.401 r_mcangle_it 1.656 r_angle_refined_deg 1.653 r_mcbond_it 0.947 r_angle_other_deg 0.888 r_symmetry_vdw_other 0.357 r_symmetry_vdw_refined 0.304 r_nbd_other 0.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.062 r_scangle_it 3.914 r_scbond_it 2.401 r_mcangle_it 1.656 r_angle_refined_deg 1.653 r_mcbond_it 0.947 r_angle_other_deg 0.888 r_symmetry_vdw_other 0.357 r_symmetry_vdw_refined 0.304 r_nbd_other 0.239 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.195 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.096 r_nbtor_other 0.086 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5462 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing