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Crystal structure of E. coli transhydrogenase domain I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 ammonium acetate, trisodium citrate dihydrate, PEG 4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 40.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.763 α = 67.11 b = 66.902 β = 80.66 c = 76.3 γ = 81.23
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 93.8 53895 48914 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 93.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 30 3 3 53895 48914 2587 0.18135 0.18135 0.17902 0.1879 0.22445 0.2331 RANDOM 27.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 -1.43 2.89 -0.6 -0.72 -0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.89 r_scangle_it 3.569 r_scbond_it 2.071 r_mcangle_it 1.394 r_angle_refined_deg 1.372 r_angle_other_deg 0.828 r_mcbond_it 0.758 r_symmetry_vdw_other 0.3 r_symmetry_vdw_refined 0.281 r_nbd_other 0.237
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.89 r_scangle_it 3.569 r_scbond_it 2.071 r_mcangle_it 1.394 r_angle_refined_deg 1.372 r_angle_other_deg 0.828 r_mcbond_it 0.758 r_symmetry_vdw_other 0.3 r_symmetry_vdw_refined 0.281 r_nbd_other 0.237 r_symmetry_hbond_refined 0.235 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.185 r_nbtor_other 0.082 r_chiral_restr 0.08 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5466 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing