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Crystal Structure of Family 30 Carbohydrate Binding Module.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WMX PDB ENTRY 1WMX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.79 293 0.1M MES, 1.2M Ammonium Sulfate, 10% Dioxane, pH 5.79, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.79 55.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.106 α = 90 b = 121.106 β = 90 c = 122.162 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2004-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 104.83 94.4 0.147 14792
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42 83.7 0.405 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WMX 3.52 20.83 12026 623 96.4 0.21043 0.21043 0.20599 0.2053 0.29436 0.2917 RANDOM 35.654
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.32 -0.64 0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.528 r_dihedral_angle_3_deg 27.387 r_dihedral_angle_4_deg 21.403 r_dihedral_angle_1_deg 12.725 r_angle_refined_deg 3.115 r_scangle_it 3.104 r_scbond_it 2.002 r_mcangle_it 1.951 r_mcbond_it 1.092 r_nbtor_refined 0.372
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.528 r_dihedral_angle_3_deg 27.387 r_dihedral_angle_4_deg 21.403 r_dihedral_angle_1_deg 12.725 r_angle_refined_deg 3.115 r_scangle_it 3.104 r_scbond_it 2.002 r_mcangle_it 1.951 r_mcbond_it 1.092 r_nbtor_refined 0.372 r_nbd_refined 0.352 r_symmetry_vdw_refined 0.31 r_xyhbond_nbd_refined 0.283 r_chiral_restr 0.206 r_symmetry_hbond_refined 0.144 r_bond_refined_d 0.037 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5564 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing