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Crystal Structure of molybdopterin biosynthesis moeA protein from Pyrococcus horikoshii OT3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbacth 7.6 295 PEG 4k, HEPES, pH 7.6, microbacth, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.5 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.149 α = 90 b = 65.912 β = 102.17 c = 76.684 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS RH coated bent-cylindrical mirror 2004-10-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.97904, 0.97939, 1.0 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 40 98.9 0.072 12.2 3.2 36236 35136 38.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 20 36236 35136 1857 98.1 0.23574 0.23321 0.2372 0.28226 RANDOM 35.141
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.78 0.23 -0.03 -2.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.461 r_scangle_it 1.215 r_angle_refined_deg 0.943 r_mcangle_it 0.749 r_angle_other_deg 0.712 r_scbond_it 0.673 r_mcbond_it 0.405 r_symmetry_vdw_other 0.224 r_nbd_other 0.195 r_symmetry_hbond_refined 0.172
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.461 r_scangle_it 1.215 r_angle_refined_deg 0.943 r_mcangle_it 0.749 r_angle_other_deg 0.712 r_scbond_it 0.673 r_mcbond_it 0.405 r_symmetry_vdw_other 0.224 r_nbd_other 0.195 r_symmetry_hbond_refined 0.172 r_nbd_refined 0.161 r_symmetry_vdw_refined 0.12 r_xyhbond_nbd_refined 0.114 r_nbtor_other 0.079 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5978 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing