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Crystal structure of ribosome recycling factor from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 PEG 8000, cadmium acetate, Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.6 52.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.317 α = 90 b = 33.794 β = 112.54 c = 62.377 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MARRESEARCH 2003-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 94.2 0.113 5581 5237
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 94.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 20 4710 4229 479 94.2 0.22633 0.22633 0.21971 0.28397 0.3005 RANDOM 46.883
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 -2.84 -1.53 -1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.865 r_scangle_it 2.532 r_angle_refined_deg 1.853 r_scbond_it 1.443 r_angle_other_deg 0.98 r_mcangle_it 0.907 r_mcbond_it 0.496 r_symmetry_vdw_other 0.388 r_xyhbond_nbd_refined 0.323 r_symmetry_hbond_refined 0.275
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.865 r_scangle_it 2.532 r_angle_refined_deg 1.853 r_scbond_it 1.443 r_angle_other_deg 0.98 r_mcangle_it 0.907 r_mcbond_it 0.496 r_symmetry_vdw_other 0.388 r_xyhbond_nbd_refined 0.323 r_symmetry_hbond_refined 0.275 r_nbd_refined 0.263 r_symmetry_vdw_refined 0.251 r_nbd_other 0.25 r_nbtor_other 0.098 r_chiral_restr 0.088 r_bond_refined_d 0.019 r_metal_ion_refined 0.019 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1368 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing