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The tetramer structure of the nervy homolgy two (NHR2) domain of AML1-ETO is critical for AML1-ETO'S activity
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 293 100mM Na citrate (pH 5.6), 100mM MgCl2, 30% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 37.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.72 α = 90 b = 75.442 β = 90 c = 30.781 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 DOUBLE CRYSTAL FOCUSING MIRRORS 2003-05-29 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B 0.97946, 0.97915, 0.96422 NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.7 0.044 24.9 6.7 10096 10096 1 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.196 5.5 5.9 683
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 40 9346 9346 493 97.7 0.233 0.21575 0.21274 0.2212 0.27012 0.272 RANDOM 31.998
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 -2.47 1.78
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.809 r_dihedral_angle_1_deg 6.186 r_scbond_it 5.886 r_mcangle_it 3.649 r_angle_refined_deg 2.794 r_mcbond_it 2.041 r_angle_other_deg 1.273 r_symmetry_vdw_other 0.35 r_nbd_other 0.272 r_xyhbond_nbd_refined 0.272
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.809 r_dihedral_angle_1_deg 6.186 r_scbond_it 5.886 r_mcangle_it 3.649 r_angle_refined_deg 2.794 r_mcbond_it 2.041 r_angle_other_deg 1.273 r_symmetry_vdw_other 0.35 r_nbd_other 0.272 r_xyhbond_nbd_refined 0.272 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.245 r_symmetry_hbond_refined 0.188 r_chiral_restr 0.175 r_nbtor_other 0.104 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_gen_planes_other 0.007 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1040 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data reduction SHELXD phasing SOLVE phasing RESOLVE model building REFMAC refinement HKL-2000 data scaling SHARP phasing RESOLVE phasing