☰ Navigation Tabs
Crystal structure of human phosphodiesterase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 PEG300, sodium citrate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.91 33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.386 α = 90 b = 55.348 β = 90 c = 78.757 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.00 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 98.2 0.057 9.4 6.5 18263
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 92 0.191 3.8 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIR THROUGHOUT 1.8 40 17284 934 97.98 0.19406 0.19238 0.22529 RANDOM 21.465
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.89 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.366 r_scangle_it 3.732 r_scbond_it 2.153 r_mcangle_it 1.379 r_angle_refined_deg 1.083 r_angle_other_deg 0.721 r_mcbond_it 0.709 r_symmetry_vdw_other 0.26 r_nbd_other 0.234 r_nbd_refined 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.366 r_scangle_it 3.732 r_scbond_it 2.153 r_mcangle_it 1.379 r_angle_refined_deg 1.083 r_angle_other_deg 0.721 r_mcbond_it 0.709 r_symmetry_vdw_other 0.26 r_nbd_other 0.234 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.149 r_symmetry_vdw_refined 0.107 r_symmetry_hbond_refined 0.096 r_nbtor_other 0.079 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1646 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing