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D136E mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 MES, Sodium Iodide, Ammonium Sulfate, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.11 41.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.151 α = 90 b = 63.722 β = 130.28 c = 79.296 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 4 2004-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 0.98 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 99.9 34677 34677
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 40 31087 3443 99.91 0.15521 0.15521 0.1502 0.1648 0.20081 0.2083 RANDOM 12.628
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -0.67 -1.58 1.63
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.293 r_dihedral_angle_1_deg 5.055 r_scbond_it 3.34 r_mcangle_it 2.008 r_angle_refined_deg 1.888 r_mcbond_it 1.182 r_angle_other_deg 0.944 r_symmetry_vdw_other 0.312 r_nbd_other 0.251 r_nbd_refined 0.223
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.293 r_dihedral_angle_1_deg 5.055 r_scbond_it 3.34 r_mcangle_it 2.008 r_angle_refined_deg 1.888 r_mcbond_it 1.182 r_angle_other_deg 0.944 r_symmetry_vdw_other 0.312 r_nbd_other 0.251 r_nbd_refined 0.223 r_symmetry_vdw_refined 0.179 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.114 r_metal_ion_refined 0.114 r_nbtor_other 0.089 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_gen_planes_other 0.008 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3326 Nucleic Acid Atoms Solvent Atoms 367 Heterogen Atoms 142
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing