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D136N mutant of Heme Oxygenase from Corynebacterium diphtheriae (HmuO)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 MES, Glycerol, Sodium iodide, Ammonium Sulfate, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.059 α = 90 b = 63.101 β = 101.03 c = 107.164 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2003-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 97.3 75503 75503
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 95.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 20 67872 7615 97.18 0.19863 0.19863 0.19576 0.2082 0.23347 0.2416 RANDOM 15.716
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 0.37 1.27 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.754 r_scangle_it 5.111 r_scbond_it 3.351 r_mcangle_it 2.123 r_angle_refined_deg 1.926 r_mcbond_it 1.309 r_angle_other_deg 1.263 r_symmetry_vdw_other 0.256 r_nbd_other 0.252 r_nbd_refined 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.754 r_scangle_it 5.111 r_scbond_it 3.351 r_mcangle_it 2.123 r_angle_refined_deg 1.926 r_mcbond_it 1.309 r_angle_other_deg 1.263 r_symmetry_vdw_other 0.256 r_nbd_other 0.252 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.176 r_symmetry_vdw_refined 0.171 r_metal_ion_refined 0.17 r_symmetry_hbond_refined 0.162 r_chiral_restr 0.129 r_nbtor_other 0.089 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_gen_planes_other 0.011 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4956 Nucleic Acid Atoms Solvent Atoms 382 Heterogen Atoms 200
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing