☰ Navigation Tabs
Crystal Structure of C-type Lectin CEL-I complexed with N-acetyl-D-galactosamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 60% 2-methyl-2,4-pentanediol, 1mM N-acetyl-D-galactosamine, 10mM calcium chloride, 0.1M Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.58 α = 90 b = 52.24 β = 91.66 c = 136.59 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS Confocal Multilayer 2003-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 141.4 96.3 59176 59176
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.79 84.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 33.81 59176 59176 3012 0.15958 0.15958 0.15812 0.1698 0.18644 0.1948 RANDOM 15.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.273 r_scangle_it 3.526 r_scbond_it 2.342 r_angle_refined_deg 1.605 r_mcangle_it 1.534 r_angle_other_deg 0.926 r_mcbond_it 0.898 r_symmetry_vdw_other 0.339 r_nbd_other 0.255 r_nbd_refined 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.273 r_scangle_it 3.526 r_scbond_it 2.342 r_angle_refined_deg 1.605 r_mcangle_it 1.534 r_angle_other_deg 0.926 r_mcbond_it 0.898 r_symmetry_vdw_other 0.339 r_nbd_other 0.255 r_nbd_refined 0.222 r_symmetry_hbond_refined 0.188 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.134 r_metal_ion_refined 0.134 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.014 r_gen_planes_other 0.014 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4536 Nucleic Acid Atoms Solvent Atoms 400 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing