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Human cytosolic acetoacetyl-CoA thiolase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WL4 CoA complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 ammonium sulfate, lithium sulfate, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.99 58.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.85 α = 90 b = 109.88 β = 90 c = 155.64 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 20 98.2 0.086 11.1 3.4 23254 23254 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.3 99.3 0.368 3.4 3.4 1169
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT CoA complex 2.26 20 -3 23254 23254 1163 98.38 0.14432 0.14432 0.14171 0.1515 0.1942 0.1943 RANDOM 32.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 -1.18 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.266 r_dihedral_angle_4_deg 15.661 r_dihedral_angle_3_deg 15.409 r_dihedral_angle_1_deg 8.583 r_scangle_it 3.726 r_scbond_it 2.811 r_mcangle_it 2.596 r_mcbond_it 2.221 r_angle_refined_deg 1.46 r_angle_other_deg 0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.266 r_dihedral_angle_4_deg 15.661 r_dihedral_angle_3_deg 15.409 r_dihedral_angle_1_deg 8.583 r_scangle_it 3.726 r_scbond_it 2.811 r_mcangle_it 2.596 r_mcbond_it 2.221 r_angle_refined_deg 1.46 r_angle_other_deg 0.822 r_mcbond_other 0.478 r_symmetry_vdw_other 0.229 r_nbd_refined 0.208 r_nbd_other 0.182 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.167 r_symmetry_vdw_refined 0.155 r_nbtor_other 0.088 r_chiral_restr 0.081 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2872 Nucleic Acid Atoms Solvent Atoms 285 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling AMoRE phasing